FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552200
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27680.5012676566461427No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25520.46215139442231074No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16650.30152118797537125No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16060.2908366533864542No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13530.2450199203187251No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13080.23687069902209343No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12740.23071350959797174No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12430.2250996015936255No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12000.21731256791017745No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11980.21695038029699384No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11340.2053603766751177No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10370.1877942774357117No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10180.18435349511046722No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9970.1805505251720391No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9940.18000724375226368No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8880.16081130025353133No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8770.15881926838102137No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8010.14505613908004347No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7980.14451285766026803No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7860.14233973198116626No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7850.14215863817457441No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7470.1352770735240855No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7250.13129300977906555No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6580.11915972473741399No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6490.11752988047808764No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6460.1169865990583122No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6280.11372691053965955No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6190.11209706628033322No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6120.11082940963419051No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6090.11028612821441507No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6070.10992394060123144No Hit
GCCAGCGATGGTGGACAGGCCTACGTTACCCACAACCAGCAGGT5700.1032234697573343No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5530.10014487504527345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)