FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552200
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59371.075153929735603No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45630.8263310394784498No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17570.3181818181818182No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16110.2917421224194132No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15670.2837739949293734No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14500.2625860195581311No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14440.2614994567185802No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14250.25805867439333574No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12980.23505976095617528No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12550.22727272727272727No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12410.2247374139804419No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12310.2229264759145237No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11180.2024628757696487No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10960.19847881202462878No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9920.17964505613908005No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9840.17819630568634554No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9700.17566099239406013No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9500.17203911626222382No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9030.16352770735240857No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8640.15646504889532778No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8340.15103223469757335No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7720.13980441868888085No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7060.12785222745382108No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7020.12712785222745382No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6900.12495472654835205No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6620.11988409996378124No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6620.11988409996378124No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6350.11499456718580224No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6340.11481347337921043No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6320.1144512857660268No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6100.11046722202100688No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5900.10684534588917059No Hit
ATTCTGCACGATGCCAAAGAACGTGCCCACA5720.10358565737051792No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5640.1021369069177834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)