FastQCFastQC Report
Sun 21 May 2023
EGAF00007926435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577089
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30060.5208901919807862No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27180.4709845448449026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17530.3037659702402922No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16630.28817045551032855No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14220.24640913273342585No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13270.2299472005184642No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12730.22058989168048604No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12470.21608452075849652No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12390.21469825278249977No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12170.21088601584850863No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11190.1939042331425482No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10840.18783931074756233No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10680.1850667747955688No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10300.17848200190958413No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10050.17414991448459424No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8950.15508872981463864No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8770.1519696268686459No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8610.14919709091665237No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8610.14919709091665237No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8300.14382530250966488No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8120.14070619956367214No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7900.13689396262968104No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7500.1299626227496972No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7260.12580381882170688No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6850.11869919544472342No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6390.110728154582742No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6260.10847546912174724No Hit
GCCAGCGATGGTGGACAGGCCTACGTTACCCACAACCAGCAGGT6250.10830218562474765No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6030.10448994869075655No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5990.10379681470275816No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5890.1020639797327622No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5840.10119756224776422No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5820.10085099525376502No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5820.10085099525376502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)