FastQCFastQC Report
Wed 31 May 2023
EGAF00007926436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577089
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61511.0658667900445165No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18600.32230730441924904No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17330.3003003003003003No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16680.28903687299532654No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16190.28054598164234634No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15270.2646038999183835No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15150.2625244979543883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13400.23219988597945898No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13100.2270013810694711No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12780.221456309165484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12680.21972347419548804No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12370.21435168578850056No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12110.20984631486651106No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11070.19182483117855306No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10380.1798682698855809No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10180.176402599945589No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9900.1715506620296003No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9620.16669872411361158No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8960.15526201331163825No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8800.15248947735964472No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7940.1375870966176794No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7840.13585426164768347No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7780.1348145606656859No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7760.1344679936716867No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7720.1337748596836883No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7650.13256187520469112No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7270.12597710231870646No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6890.11939232943272181No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6360.11020830409174322No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6350.11003502059474361No Hit
ATTCTGCACGATGCCAAAGAACGTGCCCACA6310.10934188660674524No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6240.10812890212774806No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6100.10570293316975372No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6030.10448994869075655No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5940.10293039721776018No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5870.101717412738763No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.10015786126576663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)