FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559812
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65221.1650339756918393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45080.8052703407572543No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17960.3208219902395804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17340.3097468435832029No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15350.27419919544418486No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14800.2643744685715919No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14420.2575864754596186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14380.25687194986888456No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13110.23418576236307903No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12960.2315062913978264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12640.22579008667195413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12450.2223960901159675No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11400.20363979335919916No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11330.20238937357541462No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10620.1897065443398855No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10570.188813387351468No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10350.18488349660243084No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9450.1688066708109151No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8920.15933920673368915No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8640.15433752759855093No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8220.1468350088958436No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8130.14522732631669202No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8110.144870063521325No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7360.13147270869506192No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7150.12772144934370824No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7010.12522060977613914No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6870.12271977020857003No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6820.12182661322015248No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6330.11307367473366058No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6280.11218051774524304No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6130.10950104677999042No Hit
ATTCTGCACGATGCCAAAGAACGTGCCCACA5970.1066429444170543No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5760.10289168506570064No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5620.10039084549813151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)