FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537302
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44020.8192785435378985No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32370.6024544855593317No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20060.37334683287983295No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17000.3163956210846042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14760.27470584512992696No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12630.2350633349587383No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10740.19988758649697935No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10080.18760399179604767No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.17867046837718825No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8080.15038097755080013No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6940.129163859431009No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6870.12786105393242533No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6720.12506932786403177No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6620.1232081771517694No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6220.11576357430271987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)