FastQCFastQC Report
Sun 21 May 2023
EGAF00007926448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561932
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33830.6020301388780137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21140.37620210274552796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17430.31017987941601477No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16160.287579280055238No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12830.22831944078642968No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11020.19610913776044075No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10990.19557526533459565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10000.1779574752817067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.17724564538057985No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8780.15624666329733847No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7530.13400197888712514No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7220.12848529715339224No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA7190.1279514247275471No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7040.1252820625983215No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6880.1224347429938142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)