FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544887
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42880.7869521570527467No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32940.6045290124374412No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23480.43091503375929324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17100.31382653651123993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14560.2672113667604476No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12010.22041267271929776No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9970.18297371748637792No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9930.18223962032494812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9780.17948675596958635No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8450.15507802535204548No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7110.13048577044414714No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6970.12791643037914283No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6880.12626471176592577No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6770.12424594457199382No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6700.12296127453949167No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5560.10203950543874235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)