FastQCFastQC Report
Sun 21 May 2023
EGAF00007926453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541383
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26480.4891176856310597No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT23620.4362900201890344No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22960.42409902047164394No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17360.32066023499075513No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14770.2728197967058441No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT13560.25046963055729493No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12780.23606208543674256No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT11720.21648260104214576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9140.16882687487416487No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8560.1581135720922157No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8330.15386519340282204No Hit
AAACAGACGGCCCTGCAGCAGCGGATCGTCGGTGAAGTCCACAC8250.15238749646738076No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8170.15090979953193948No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8050.1486932541287776No Hit
GCGGAAGGCATCGGAGTCATAGCGACGCTTGTCCTGTGCGATGT8050.1486932541287776No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8010.14795440566105697No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7900.1459225723748252No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7550.13945764828226967No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7260.13410099689129507No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG7260.13410099689129507No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6850.12652780009715858No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6630.1224641335246951No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6450.11913931541995224No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6200.11452151249669827No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG6080.11230496709353638No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT5590.10325407336395862No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5480.10122224007772684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)