FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524894
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58601.1164158858741002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43810.83464470921748No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23070.4395173120668173No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16200.30863374319386394No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.3017752155673336No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15780.3006321276295785No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14520.27662728093672245No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA13520.2575758153074716No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC10550.20099296238859657No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9060.1726062786010128No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8890.16936752944404013No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7720.14707731465781665No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA7570.144219594813429No Hit
GTTCCGGAAGAAATCATCCCGGTTACCAAAC7390.14079033100016383No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7300.13907569909353126No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7300.13907569909353126No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7100.1352654059676811No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG7080.13488437665509606No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6750.1285973929974433No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6700.12764481971598074No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6430.12250092399608303No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6090.11602342568213773No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG6060.11545188171326021No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6010.11449930843179766No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.11183210324370253No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5630.10725975149268234No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5530.10535460492975723No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5300.10097276783502954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)