FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545529
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30770.5640396752509949No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25960.4758683772998319No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24520.4494719804080076No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23790.4360904736503467No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG21550.3950294118186201No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20300.3721158728500226No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19340.35451827492213983No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17180.3149236795844034No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT15590.2857776580163474No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14340.26286411904775No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13880.25443193670730613No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13560.24856607073134515No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12490.22895208137422574No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12270.2249192985157526No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12240.22436937358050624No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10780.19760636006518445No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10270.18825763616599667No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9870.18092530369604548No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9660.17707582914932113No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9560.17524274603183332No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9290.17029342161461627No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8930.1636943223916602No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8830.1618612392741724No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8630.15819507303919683No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8610.15782845641569926No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8300.1521458987514871No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8270.15159597381624076No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8250.1512293571927432No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7850.143897024722792No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7630.13986424186431887No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7460.1367480005645896No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7410.1358314590058457No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7110.13033220965338232No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7090.12996559302988475No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG6670.122266643936436No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6630.12153341068944089No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6460.11841716938971164No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6100.11181807016675557No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5800.10631882081429218No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5510.10100287977357757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)