FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences597363
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32560.5450622151020401No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC29140.48781059422830003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28950.4846299486242034No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28690.4802774862185974No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26320.4406031173674968No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21670.36276100126723615No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19810.3316241548271319No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17400.29128017637516884No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17260.2889365427721503No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15710.26298917073873007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15360.25713008673118354No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14850.24859256432018723No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14350.2402224443094065No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14180.23737660350574108No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12340.20657456186606804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11780.19720002745399362No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11380.19050393144536906No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA11270.1886625050429973No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10720.1794553730311385No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10570.1769443370279043No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9810.1642217546115176No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9490.15886487780461797No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9320.15601903700095252No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9250.15484722019944322No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT9220.15434501299879638No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9100.152336184196209No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC8620.1443008689858595No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8570.14346385698478145No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8290.13877658977874424No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7720.12923465296645423No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7520.12588660496214193No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7090.11868830175287054No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7000.11718168015093001No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6930.1160098633494207No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6770.11333142494597089No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6520.10914636494058051No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6520.10914636494058051No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6080.1017806593310935No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6040.10111104973023104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)