FastQCFastQC Report
Wed 31 May 2023
EGAF00007926475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565579
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC19910.3520286290686182No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12640.22348778862015742No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9360.16549412195290136No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9170.16213473272522494No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7230.1278336006110552No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6850.12111482215570238No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6350.11227432418813287No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6060.10714683536694254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)