FastQCFastQC Report
Wed 31 May 2023
EGAF00007926476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565579
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAACGTCCGGTGTACCCGAAACCGGTTC19930.35238224898732096No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12310.21765305996156153No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10240.1810533983758237No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9920.17539547967657923No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9360.16549412195290136No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7500.13260746951354274No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6690.11828586280608014No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6680.11810905284672876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6210.10979898475721339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)