FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537737
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43710.8128508917928281No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC19140.3559360802771615No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11690.21739251715987554No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9950.1850346916801336No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9470.17610839499606687No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7000.1301751599759734No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6070.11288046015059407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5970.11102081500808017No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5880.10934713437981765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)