FastQCFastQC Report
Wed 31 May 2023
EGAF00007926485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436348
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC36340.8328215094374215No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT35130.8050913491066763No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC32330.7409223830520594No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31890.7308386883863338No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC27140.6219806209722515No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26410.6052508548222978No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG24550.5626243273717307No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG20780.47622539807676445No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20060.4597248068055772No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT19840.4546829594727145No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19820.4542246097151815No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18590.4260360996269033No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16850.3861596707215342No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16700.38272204754003686No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15680.359346209905855No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14960.3428456186346678No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG13530.3100736109710598No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG13470.3086985616984609No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13160.3015941404566997No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12480.28601024870057845No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11620.2663012091266604No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11220.25713421397600084No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9550.21886200922199714No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9500.2177161348281647No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9470.2170286101918652No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8900.20396564210217535No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8720.19984049428437853No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8520.19525699670904875No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7870.18036062958922694No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT7250.16615178710570463No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6630.1519429446221823No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6430.14735944704685253No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6320.14483852338042114No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6220.14254677459275625No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6080.13933832629002538No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5870.13452565383592913No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5810.1331506045633302No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG5240.1200876364736403No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5150.11802506256474189No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5150.11802506256474189No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4940.11321239011064563No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4790.1097747669291483No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4720.10817054277778286No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4690.10748301814148341No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4690.10748301814148341No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4450.10198282105108768No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4440.10175364617232119No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG4370.10014942202095575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)