FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407538
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33730.8276528814490919No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT33630.8251991225358126No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28300.6944137724580284No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28160.6909785099794374No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC25280.620310253276995No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA25000.6134397283198132No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG21890.5371278261168283No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG18870.4630243069357949No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT18510.45419077484798964No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18000.44167660439026546No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17500.4294078098238692No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17330.42523641967129444No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15760.3867124047328102No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15360.3768973690796932No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14990.36781846110055993No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13330.32708606314012434No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12830.3148172685737281No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG12690.3113820060951371No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12340.30279384989865976No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11520.2826730268097699No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11410.2799738920051627No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10450.25641780643768186No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8810.21617616025990213No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8590.2107778906506878No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8590.2107778906506878No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8310.20390736569350587No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7940.19482845771437265No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7900.19384695414906095No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT7040.17274462749485936No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6980.1712723721468918No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6070.14894316603605062No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6070.14894316603605062No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5850.14354489642683627No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5840.14329952053550835No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5700.1398642580569174No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5290.12980384651247245No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5280.12955847062114453No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4910.12047956264201129No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC4820.11827117962005998No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4790.11753505194607619No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4760.11679892427209242No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG4680.11483591714146903No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4640.11385441357615732No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4560.11189140644553393No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4560.11189140644553393No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4520.11090990288022222No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4470.10968302342358259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)