FastQCFastQC Report
Wed 31 May 2023
EGAF00007926489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376221
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT28740.7639127002479925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16660.4428248290233666No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT15040.39976503172337535No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12360.32853030532585903No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10870.2889259238585831No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9940.2642064105937733No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA8600.22858904739501518No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6930.18420024400551804No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6590.1751630025968779No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6260.16639156240613895No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5950.15815172465120234No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5760.15310150151107993No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5480.14565906740984685No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5420.14406426010243978No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5200.13821663330861383No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5180.13768503087281148No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5120.13609022356540437No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4980.13236900651478786No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4920.13077419920738076No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4350.11562352978701348No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4220.11216811395429814No Hit
TTTTACGTCTTCCGGAATTGCTTTGCGACGGCGTTTTTTACCTT4210.11190231273639696No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC4050.10764949324997806No Hit
TACGGATTTCACACCCAGGGTGTGGATGCCCGCGCTCAGGTTTT4030.10711789081417572No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG3970.10552308350676863No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3960.10525728228886744No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC3900.10366247498146038No Hit
CAGCAGAGTACCACCTTTAGCGTCCATAATGATATCACCCTGGG3890.10339667376355918No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3850.10233346889195445No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA3840.10206766767405329No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG3800.10100446280244856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)