FastQCFastQC Report
Wed 31 May 2023
EGAF00007926490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376221
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58461.5538739198503007No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27950.7429144040337993No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26530.7051706310918316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16490.4383062083190465No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG15190.403752049991893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10930.2905207311659902No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8740.2323102644456317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8080.21476738406415377No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7370.19589549759317No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6560.17436559894317435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6110.16240454413762123No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6070.16134133926601651No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5620.14938028446046342No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5520.1467222722814516No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.14592486862774806No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5400.14353265766663745No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5390.14326685644873624No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5380.14300105523083506No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5330.14167204914132916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5100.135558621129602No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4940.13130580164318315No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4660.12386336754195007No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4600.122268560234543No Hit
GCTAAACTGAACCCGTCTAGCATCAAGGCCC4320.11482612613330995No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC4180.11110490908269341No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4080.10844689690368162No Hit
GCACCGAGCGTTGATCCAATCGTGGAGGCTA4050.10764949324997806No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4000.10632048716047217No Hit
GCGCTGAAGGCGGGCGCAGTTGAAGCGGCGT4000.10632048716047217No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3960.10525728228886744No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG3950.10499148107096627No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG3920.10419407741726273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)