FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428327
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT33410.7800115332444605No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC28800.672383482712974No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25960.606079000389889No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22750.5311362580458387No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT20010.46716644059328505No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13960.32591921592614986No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT11360.2652179292923397No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10740.25074300709504654No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9290.21689036647234472No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8940.20871903942548567No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8600.20078117886567973No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7440.17369906636751828No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7310.17066400203582777No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA6090.14218109061534762No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA5800.13541056249080724No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5500.12840656787921378No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5420.12653883598278884No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5390.12583843652162952No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG5250.12256990570288588No Hit
CGGTTTTACCGCGATGGAACGGCGACGACGGCGACCAGCGTAAA5180.12093564029351407No Hit
GCGCAGTGCACGGCGTGCACGACGCGGGGAGGCAGCTTCAACTG4980.11626631055245175No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4900.11439857865602682No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG4820.1125308467596019No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG4730.11042964837612386No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4670.10902884945380516No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4640.10832844999264579No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4480.10459298619979594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)