FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428327
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59841.397063458525846No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32900.7681047424047515No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG28670.6693484183812834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21640.5052214779829429No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20680.48280869522584385No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14070.32848734728373413No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12300.28716377907533264No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11080.2586808676548525No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9830.22949755677321299No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9320.2175907659335041No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8530.19914691345630792No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7400.17276520041930582No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT6030.14078029169302891No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5920.13821216033544464No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG5920.13821216033544464No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5540.12934043382742624No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5510.1286400343662669No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG5070.11836750893592979No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG5010.11696671001361109No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4990.11649977703950486No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4980.11626631055245175No Hit
GCGGGTGGTGCTCTGTCTCTGGCCGCAGCTG4930.11509897811718617No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4870.11369817919486747No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4850.11323124622076124No Hit
GGTGAAATGGGCACCCCTGGTCCGAAGGGCG4770.1113635143243363No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4580.10692765107032712No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4530.10576031863506154No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4510.10529338566095531No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4490.10482645268684906No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT4320.10085752240694609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)