FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437002
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT34340.785808760600638No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC28270.6469077944723365No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26180.5990819263985062No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23850.5457640926128484No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT21650.4954210735877639No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13900.31807634747667063No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT11490.26292785845373706No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10680.24439247417631957No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9750.22311110704298837No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8910.20388922705159243No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8830.20205857181431666No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7460.17070860087596854No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7410.16956444135267115No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA7020.1606399970709516No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6030.13798563850966356No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA5780.1322648408931767No Hit
GCGCAGTGCACGGCGTGCACGACGCGGGGAGGCAGCTTCAACTG5520.12631521137203033No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5400.12356922851611662No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG5250.1201367499462245No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5210.11922142232758659No Hit
CGGTTTTACCGCGATGGAACGGCGACGACGGCGACCAGCGTAAA5120.11716193518565132No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5120.11716193518565132No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4790.10961048233188865No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG4740.10846632280859125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4720.10800865899927231No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4690.1073221632852939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)