FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437002
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63351.4496501160177757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT33750.7723076782257289No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG28400.6498826092329096No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA22540.5157871131024572No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14570.33340808508885544No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13940.3189916750953085No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12560.2874128722523009No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11050.25285925464872017No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9910.22677241751754No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9080.20777936943080352No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8840.20228740371897613No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7400.16933560944801168No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7050.16132649278493005No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG5770.13203600898851722No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5720.13089184946521984No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5650.1292900261326035No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5470.12517105184873295No Hit
GCGGGTGGTGCTCTGTCTCTGGCCGCAGCTG5400.12356922851611662No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5360.12265390089747873No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG5320.12173857327884084No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5300.12128090946952187No Hit
GGTGAAATGGGCACCCCTGGTCCGAAGGGCG4930.11281412899712129No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.11212763328314287No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.11029697804586706No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4680.10709333138063443No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4570.10457618042938017No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG4500.10297435709676386No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4430.10137253376414754No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC4380.10022837424085015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)