FastQCFastQC Report
Sun 21 May 2023
EGAF00007926497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411365
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31210.7586936175902179No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC27370.6653458607319533No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25050.6089482576300852No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22560.5484180715423043No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19870.4830260231181554No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13170.3201536348498292No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10140.24649642045385484No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9400.22850752980929345No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9390.22826443669247504No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9200.2236456674729255No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8280.20128110072563293No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7580.18426458254834516No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7280.17697178904379324No Hit
AACGTTCAGCGCTACGAACTGTGCTTTCGCCATAGCGTCAGAAA5810.14123710087148883No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG5480.13321502801648172No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5450.13248574866602653No Hit
CGGCTTAACCGCGATGGAACGGCGGCGACGACGGCCAGCGTATA5420.13175646931557133No Hit
GCGCAGTGCACGGCGTGCACGACGCGGGGAGGCAGCTTCAACTG5230.12713770009602177No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5120.12446367581101941No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5050.12276202399329063No Hit
CGGTTTTACCGCGATGGAACGGCGACGACGGCGACCAGCGTAAA4960.12057418594192505No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4680.11376757867100992No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4610.11206592685328114No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG4340.10550241269918442No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4330.10525931958236603No Hit
AGTGGAAACGCCGTGGGTGTTAACGTTGTTAGACAGGGTGAAAT4230.10282838841418206No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG4180.10161292283009007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)