FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411365
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58901.43181845806036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58471.421365454037169No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30750.7475113342165717No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG27180.6607270915124038No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20180.49056190973952574No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13000.3160210518639165No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11050.268617894084329No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9740.23677269578111895No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9510.2311815540942958No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9270.2253473192906543No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8130.197634703973357No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7260.17648560281015643No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG6070.14755752190876717No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5710.13880616970330487No Hit
GGTGAAATGGGCACCCCGGGTCCTAAAGGTG5240.12738079321284018No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5220.12689460697920338No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5040.12251893087647224No Hit
GCGGGTGGTGCTCTGTCTCTGGCCGCAGCTG5040.12251893087647224No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4950.12033109282510665No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4780.1161985098391939No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4660.11328139243737313No Hit
GGTGAAATGGGCACCCCTGGTCCGAAGGGCG4590.11157974061964436No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG4430.10769025075054998No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4370.10623169204963961No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG4340.10550241269918442No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4300.10453004023191083No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4300.10453004023191083No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG4250.10331457464781886No Hit
ATCGGCAGCATTGAAGGCCACAACAACACCA4240.10307148153100044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)