FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417818
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21770.5210402615492871No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17060.4083117529642093No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14960.3580506344867861No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11900.28481300470539805No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9540.22832908108315103No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.19338563680837112No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7840.18764150898237988No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7150.17112714148265512No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5480.1311575853601329No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4390.1050696714837561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)