FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383341
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64411.6802272650199168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21390.5579888402231955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19640.5123375793353698No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15590.40668751842354456No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12650.32999340013199735No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11370.29660276359690196No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10540.27495102271867605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9780.2551253322759632No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9540.24886458792563276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9530.24860372357770238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6310.16460540354410305No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5740.14973613571206837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5650.14738835658069446No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.14530144179725102No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5450.1421710696220858No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5070.13225822440072937No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5060.13199736005279894No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5060.13199736005279894No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC4860.1267800730941903No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4670.12182365048351207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4420.11530204178525126No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4190.10930216178285129No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4150.10825870439112957No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4050.10565006091182524No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4050.10565006091182524No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3960.10330228178045135No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA3840.10017190960528614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)