FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417978
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23080.5521821722674399No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22590.5404590672236338No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18380.4397360626635852No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15450.3696366794424587No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14240.34068778739550887No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12290.2940346142619947No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12010.28733569709410545No Hit
ATGTCCAACATGGACATCGATGGTATTAACA11180.2674781926321481No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10820.25886529913057627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10040.24020402987717054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7310.1748895874902507No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6250.1495294010689558No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6110.14617994248501118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.14163424869251492No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5800.13876328419199097No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5750.13756704898343933No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5630.13469608448291537No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5590.13373909631607406No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5010.11986276789687496No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4990.11938427381345429No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4950.11842728564661299No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4920.11770954452148198No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4750.1136423448124064No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4470.10694342764451718No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4450.10646493356109651No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4200.10048375751833828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)