FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395113
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57011.4428783664420053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21640.5476914199229082No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20330.5145363478296082No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16340.41355257862940475No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13380.33863730122775004No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11170.28270393532989296No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11020.27890755302913345No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10040.2541045219975045No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9790.2477772181629053No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9450.23917208494785036No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6940.17564595444847425No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.15362693710406897No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5930.15008364695669338No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5900.14932437049654151No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5440.13768213144087896No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5440.13768213144087896No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5300.13413884129350337No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5160.1305955511461278No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4980.12603989238521637No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4830.12224351008445686No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4620.11692857486339352No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4540.11490383763632175No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4350.11009508672202635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4260.10781725734157065No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4250.10756416518818666No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4120.10427396719419509No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4090.10351469073404318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)