FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457892
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15960.3485538074480445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10680.23324277340508243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10230.22341512845823905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9780.2135874835113957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9130.1993919963659553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8080.1764608248233208No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7970.17405851161409241No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7730.16881710097577596No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6100.13321918705721No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6090.13300079494728015No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5790.12644903164938456No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5400.11793173936212031No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5250.11465585771317255No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5150.11247193661387402No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.10526499698618888No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4690.1024258995571008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)