FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451530
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10730.2376364804110469No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7910.17518215843908488No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6870.15214935884658826No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6750.1494917281243771No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6650.14727703585586782No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5780.12800921311983698No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5400.11959338249950169No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5120.11339224414767567No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4780.10586229043474409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)