FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007926526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451530
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG75341.6685491550948994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17330.38380617013266005No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10010.22169069607778No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6620.14661262817531504No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6600.14616968972161318No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5510.12202954399486192No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5320.11782162868469426No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5170.11449959028193032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4810.10652669811529689No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4520.10010409053661995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)