FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469398
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10910.23242536184645016No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8670.18470466427211024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7390.1574356942296303No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6810.14507944217913157No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6710.14294905389456283No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6360.1354926948985722No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5760.12271036519115974No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5530.11781047213665163No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5100.10864980251300602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)