FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407339
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG15760.3869013278866006No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8870.21775474481942558No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7960.19541463007470436No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6280.154171341315219No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5950.14606998102317725No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5350.13134023503764677No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4890.1200474297820734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)