FastQCFastQC Report
Wed 31 May 2023
EGAF00007926534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407339
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58761.4425331235162848No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG15140.3716805903682191No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8500.2086714014616818No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8120.1993425623375125No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7940.19492363854185335No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6050.14852493868743233No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5790.14214204876036912No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5140.1261848239427111No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4810.11808346365066935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)