FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389649
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60901.562945112139387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.25997756955619034No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10000.2566412335204248No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6260.16065741218378593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.13396672389766176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4770.12241786838924262No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4600.1180549674193954No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4560.11702840248531371No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4200.1077893180785784No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3960.10162992847408822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT3940.10111664600704737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)