FastQCFastQC Report
Wed 31 May 2023
EGAF00007926542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408208
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59221.450730999882413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55021.347842276486497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33090.810616156469251No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21730.532326656998393No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20480.5017050131305609No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19790.4848018657155176No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18050.4421765374514953No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14570.3569258809234508No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13500.3307137537725865No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13060.31993493513110965No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12990.31822012307451103No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12600.30866617018774745No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10990.2692254928859797No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9890.24227844628228745No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9360.22929486928232665No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9350.229049896131384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9350.229049896131384No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9160.22439540626347354No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9050.2217007016031043No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8380.20528750048994632No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8340.20430760788617566No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8320.20381766158429038No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8250.20210284952769178No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7970.1952436013012974No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7920.19401873554658408No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7180.1758907223768275No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6560.1607023870183828No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6440.1577627092070709No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6420.15727276290518558No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6120.1499235683769059No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5510.13498020616940384No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5320.13032571630149337No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5250.12861090424489477No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5110.12518128013169755No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4730.11587230039587662No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4490.10999294477325285No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4470.10950299847136753No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4170.10215380394308783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)