FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456451
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57991.2704540027297564No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA49871.0925597709283144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25330.5549336073313456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21570.47255893841836255No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21200.464452920466819No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15730.3446153037237294No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14910.32665061529057887No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11670.2556681878230084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10650.23332186806469918No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10640.23310278649844124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8590.18819106541556488No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7990.17504617144008885No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7840.17175994794621988No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7230.1583959724044859No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.14744189409158925No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.1426220996339147No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.14043128397133536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6230.13648781577869257No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5930.12991536879095456No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5610.12290475867070068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5460.1196185351768317No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5430.11896129047805788No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5420.11874220891179994No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5290.11589414855044682No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5210.11414149602038334No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4870.1066927227676136No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4760.10428282553877634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)