FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429784
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60741.4132680602349088No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51701.2029298438285279No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA47771.1114885616961077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22230.5172365653444521No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19710.4586024607709919No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19370.45069151015393777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13510.31434394951882805No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11490.2673435958528005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9550.22220464233196213No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9490.22080859222307017No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.1747389386296372No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7430.172877538484448No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7420.17264486346629937No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7270.16915473819406956No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6150.1430951361614206No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5980.13913966085289353No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5970.1389069858347449No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5890.1370455856895557No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.13564953558066378No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5250.12215438452804199No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5030.11703553412877167No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5030.11703553412877167No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.11680285911062302No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4750.11052063362060943No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4730.11005528358431212No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4570.10633248329393369No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4460.10377305809429853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)