FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564531
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10670.18900644960152765No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9280.16438424107799218No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7640.13533357778403665No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA7020.12435100995339494No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6740.11939114061052448No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6320.1119513365962188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)