FastQCFastQC Report
Wed 31 May 2023
EGAF00007926561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561550
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26420.4704834832160983No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22410.399073991630309No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21020.37432107559433714No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16960.3020211913453833No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14950.2662274062861722No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14080.25073457394711063No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14000.24930994568604756No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12990.23132401389012552No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10890.1939275220372184No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8370.14905173181372985No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8160.14531208262843914No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7670.13658623452942747No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7540.1342712136051999No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6560.11681951740717655No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6360.11325794675451874No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6040.10755943371026622No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5780.10292939186181105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)