FastQCFastQC Report
Sun 21 May 2023
EGAF00007926563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582266
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27450.4714340181291712No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24260.41664806119539866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22730.39037141100459244No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17350.29797377830750893No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15830.2718688709284073No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14740.25314890445260413No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13950.23958122232793946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12700.21811337086486246No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10810.18565397945269002No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9000.1545685305341545No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8850.15199238835858525No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8290.14237479090312674No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7560.12983756564868976No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6990.12004822538152667No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6300.10819797137390813No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6190.10630880044515736No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5940.10201523015254198No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5900.1013282589057235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)