FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528805
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48360.9145148022427927No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17920.33887727990469074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12230.23127617930995356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8290.15676856308090883No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7420.14031637371053604No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6670.12613345183952496No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6630.1253770293397377No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6470.1223513393405887No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6140.11611085371734382No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5960.11270695246830117No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5820.11005947371904576No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5510.10419719934569455No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5380.10173882622138596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)