FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534437
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49040.9176011391426866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18110.33886126896154267No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12130.22696781847065228No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8690.16260101751937084No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7590.14201861023843781No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7460.13958614392341848No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6820.1276109251417847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6660.1246171204463763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6620.12386866927252417No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5940.11114499931703829No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5920.11077077373011227No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5830.109086758588945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5750.10758985624124079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)