FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550948
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22010.39949323711130635No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21590.39187001314098613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19710.3577470106071716No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15580.28278530823235587No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15520.2816962762365958No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14550.2640902589718086No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14180.25737456166462175No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12030.21835091514988708No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9170.16644039001865873No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT8790.1595431873788452No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT8270.15010491008225824No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8220.14919738341912486No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7900.14338921277507133No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7760.1408481381182979No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7530.13667351546788445No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA7190.13050233415857757No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7180.13032082882595092No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6980.12669072217341745No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6930.12578319551028408No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6760.12269760485563067No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6700.12160857285987063No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6600.1197935195336039No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT6190.11235180089591032No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG6130.11126276890015029No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6030.10944771557388357No Hit
ATATGCGAAGCGGCCTTCCGCGTTGTACGCTTTCTCCATCGCGT5850.10618061958660345No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5720.10382105026245671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)