FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555296
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22560.4062698092548838No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21240.3824987033942258No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21010.37835676828214143No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15430.2778698207802685No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14980.2697660346914078No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14070.2533783783783784No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13660.24599492883074972No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11810.21267936379876679No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9970.17954388290209186No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT9130.16441681553621854No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT8740.15739353425920588No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8280.14910966403503717No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7970.14352705584048867No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7740.1393851207284043No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7260.13074108223361955No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7210.12984066155707946No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7160.12894024088053938No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6960.12533855817437906No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6770.12191695960352678No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6710.12083645479167868No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6670.1201161182504466No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6530.11759494035613438No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6520.11741485622082637No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT6460.11633435140897827No Hit
ATATGCGAAGCGGCCTTCCGCGTTGTACGCTTTCTCCATCGCGT6010.10823056532011756No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6000.10805048118480955No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5670.102107704719645No Hit
GCCGCTGGTAGCCGGTTTGACTTCGTGCAGAATAGACACCTTCG5610.10102719990779693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)