FastQCFastQC Report
Sun 21 May 2023
EGAF00007926572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555296
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51250.9229311934535815No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21740.39150291015962657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21360.38465971301792196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15680.28237192416296897No Hit
ATGTCCAACATGGACATCGATGGTATTAACA14630.2634630899556273No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14050.2530182101077623No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13370.24077248890681727No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11280.2031349046274419No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10890.19611162335042934No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9600.17288076989569526No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9320.16783841410707082No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9280.16711807756583874No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA8550.1539719356883536No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8500.1530715150118135No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7610.1370440269694001No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7510.13524318561631996No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7480.1347029332103959No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7380.13290209185731575No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7250.13056099809831154No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC7150.12876015674523136No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6990.12587881058030312No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6890.12407796922722296No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6520.11741485622082637No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA6450.11615426727367024No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6370.11471359419120612No Hit
CTGGTGCAGGACTCCGTGATCGCCGGCGCTA6320.11381317351466605No Hit
ATCCCGCTGACCACTACCCCAACCAAATCCC6310.11363308937935804No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG6030.1085907335907336No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6000.10805048118480955No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5870.10570938742580534No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5870.10570938742580534No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5870.10570938742580534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)