FastQCFastQC Report
Sun 21 May 2023
EGAF00007926573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541698
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21610.3989307695431772No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20340.3754859718883954No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20090.37087085423981625No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14750.2722919412661668No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14570.26896905655918985No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14200.2621386824392927No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14200.2621386824392927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11290.20841871300983206No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9740.17980498358864164No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT8670.16005228005272312No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT8600.15876004711112096No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8220.15174506828528073No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7910.14602232240104263No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7250.13383841180879383No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7230.1334692023969075No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7130.13162315533747587No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6940.12811566592455575No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6870.12682343298295362No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6810.1257158047472946No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6520.12036226827494287No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6500.11999305886305654No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT6430.1187008259214544No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6380.11777780239173856No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6340.11703938356796592No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6160.11371649886098897No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5970.11020900944806884No Hit
ATATGCGAAGCGGCCTTCCGCGTTGTACGCTTTCTCCATCGCGT5600.10337863532817178No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5470.10097877415091065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)