FastQCFastQC Report
Wed 31 May 2023
EGAF00007926574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541698
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50730.9364996732496704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48900.9027170120620714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20980.3873006730687579No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20240.37363992482896374No Hit
ATGTCCAACATGGACATCGATGGTATTAACA14540.26841524244136034No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14530.26823063773541717No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14330.2645385436165539No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12290.22687918360414844No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10490.19365033653437894No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8980.1657750259369612No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8720.16097530358243892No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA8670.16005228005272312No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8610.1589446518170641No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8570.15820623299329148No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7290.13457683063256648No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7280.13439222592662334No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7240.13365380710285066No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7230.1334692023969075No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC7190.13273078357313484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6790.1253465953354083No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6700.12368515298191983No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6600.12183910592248819No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6590.12165450121654502No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA6410.11833161650956807No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG6150.1135318941550458No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6040.11150124238967099No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6010.11094742827184151No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5680.10485547297571711No Hit
ATCCCGCTGACCACTACCCCAACCAAATCCC5650.10430165885788761No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5650.10430165885788761No Hit
CTGGTGCAGGACTCCGTGATCGCCGGCGCTA5630.10393244944600127No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5520.10190179768062646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)