FastQCFastQC Report
Wed 31 May 2023
EGAF00007926576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531317
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33660.6335201019353794No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21240.39976134774531963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17790.334828360470303No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16370.30810231933102084No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16020.30151491482485976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15650.29455108720406087No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15410.29003400982840755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14140.26613114204890864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13240.24919210189020868No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12580.23677013910716202No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11650.2192664642765054No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10820.2036449050190376No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10310.19404611559577428No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10170.19141115379330984No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10080.1897172497774398No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9440.17767171010903096No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9050.1703314593735943No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7620.1434172066769932No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.13890012930133988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7170.13494768659764322No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.13155987856590323No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6540.12309035848655323No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6430.12102003135604546No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.10916270324495544No Hit

[OK]Adapter Content

Adapter graph